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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAGgtaaatataatcaaacttcttttggttatatactgttcttgatcttaccttaacagtgttttatttgaccag

Basic information

species Arabidopsis thaliana
transcript AT5G53900.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 5
CTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAGgtaaatataatcaaacttcttttggttatatactgttcttgatcttaccttaacagtgttttatttgaccag-------------
|||||||| |||||||||||||| |||| ||||||||| |||| ||            |  ||||   |  | | |  || | |   |  || | || |     ||  || | |             
CTTCCTCCGGAATGGACCGACCAGTTCGCATCAGGCATCCAGgcaagagctggtgttttggttttatctgcacaattctcgttagtctttctaatcaat---caatacgatctgttgttgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124881202|gb|EH960104.1|EH960104
EST:     CTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAG                         ACAATTGCTGTGATTCAAGCTGGACAT
genomic: CTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAGgtaaatataa ... atttgaccagACAATTGCTGTGATTCAAGCTGGACAT
EST: gi|124861062|gb|EH945499.1|EH945499
EST:     CCGACCAATTCGAATCAGGCATTCAG                         ACAATTGCTGTGATTCAAGCTGGACATGGTCTGTTACAGCTAGGTTCTTGC
genomic: CCGACCAATTCGAATCAGGCATTCAGgtaaatataa ... atttgaccagACAATTGCTGTGATTCAAGCTGGACATGGTCTGTTACAGCTAGGTTCTTGC