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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgtacacacttctctctctctctttctctctctgttcatcaatctttctctgtttctttaccttttttatgttccactttctgatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G53900.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 1
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgtacacacttctctctctctctttctctctctgttcatcaatctttctctgtttcttt-accttttttatgttccactttctgatttcag-----
|||| || |  || |||||||| || || || || ||  | | ||||||  | ||||||||||||| |||||| |||||||||||||| ||||| || |||||       | ||   |   || |   | ||  | || ||| |||  ||    || | | ||  | | |  |||   |    || ||       
AAGAGGCCGCCGGGATGATGGCTCTCCACGAGGCCCTCCGCAACGTCTGCCTCAACTCCGACTGGACTTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtgtaccacttaattaattaccacccctcct-atgaatttttgcctcaaactctcatctcatctcttctccctatatatatgtcgtcgaag

upper sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgta---cacacttctctctc--tctctttctctctctgttcatcaatctttctctgtttctttaccttttttatgttccactttctgatttcag--------------
|||| ||||| || |||||||| |||||||| || || ||||| |||||| | ||||| ||||||| ||||||||||||||||||||||||||| || |||||   ||  ||||||| ||  ||||||  ||||||| |   ||  ||| |||||   |    ||| |       | || |     | | |  |              
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag

upper sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA12G35490.1 (Glycine max), 5'ss of exon 1
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgtacacacttctctctctctctttctctctctgttcatcaatctttc--tctgtttctttaccttttttatgttccactttctgatttcag------------------------------------------------------------------------------------------
|||| ||||| || |||||||| ||||||||  | || ||||| |||||| | ||||| || |||| ||||||||||||||||||||||||||| || |||||  |   ||| |   ||||||| | | |   | | | ||  ||     | | |      |  |    |   ||   |     | || ||                                                                                          
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGACCCTCAGAAGAGTCTGTCTCAACTCAGAATGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgc-tatctatacttctcttttttttttaatccgtaaaaattgaagaccggtatcaggcaatacccacactcttttcaaccaattgagctatagtcctttggtctctctttctgtttcttaactctaacttcaaccaataacctcttacctcaactgggtcttgtccatttcatacag

upper sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgtacaca-cttctctctctctctttctctctctgttcatcaatctttctctgtttctttaccttttttatgttccactttctgatttcag------------------------------
|||| ||||| || |||||||| |||||||| || || ||||| || ||| | ||||| || |||| ||||||||||||||||||||||||||| || |||||  |  ||||||||||||||| | | |      | ||  ||  | ||   ||   |    |||| |  | |    ||| |  | |||                               
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttat-gatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag

upper sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA12G27400.1 (Glycine max), 5'ss of exon 1
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgtacacacttctctctctctctttctctctctgttcatcaatctttctctgtttctttacctttttta-tgttccactttctgatttcag--------------------------------
|||| ||||| || |||||||| |||||||| || || ||||| || ||| | ||||| || |||| ||||||||||||||||||||||||||| || |||||  |  |||||||||||||| ||||||||| ||  |   |  || | ||| | | | |   ||| | || |    |||  | | |                                   
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgc--ttctctctctctctctctctctctctttctgcgtggttgtgtgtatatgtgctactttgaatggtgttttttgaggtgtttttctcaactgggtcttctccattttttttgcag

upper sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgtacacacttctctct---ctctctttctctctctgttcatcaatctttctctgtttctttaccttttttatgttccactttctgatttcag--
|||| || || || |||||||| |||||||| || |||||||| |||||| | ||||| ||||||| ||||||||| ||||||||||| ||||| || |||||       || |||   || | | | ||| |||||   | | | |||   | |     ||  || |  |      |  |||   |||     
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgattttttggttttcctgatattttctcaaacgggtatcttccatttttgcag

upper sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ05904 (Selaginella moellendorffii), 5'ss of exon 1
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgta--------cacacttc---tctctctctctttctctctctgttcatcaatctttctct-------gtttctttac--cttttttatgttccactttctgatt--tcag--------------
  || |   | | | | ||||| || || ||||| ||  | |  || ||| | | ||| || |||| ||||||||||||||||||||| ||||||||||||||        | ||| |     | |  ||||| |||| |||| |   ||  ||| |||||       |||  || ||  | ||  || ||| |    |||||||  || |              
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaagcagctcaccttaagcccccttctctctctcactctctctctcgctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag

upper sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ26828 (Selaginella moellendorffii), 5'ss of exon 1
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgtaca-----------------cacttctctctctctctttctctctctgttcatcaatctttctctgtttctttaccttttttatgttccactttctgatttcag-------
  || |   | | | | ||||| || || ||||| ||  | |  || ||| | | ||| || |||| ||||||||||||||||||||| ||||||||||||||                   | |   ||||||||||| |||||||||  || ||  | |||| |||  |   ||| ||  ||    |      ||||  ||          
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaggcagctcgccttaagcccccttctctctctctctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag