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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGCCAGGTGAATCTTGGCACCCAAATGTGGTTAAACTGTCTCTTCATCACCCGGACGAGgtatgttgttcacaaaactaagataatccttgcataagtcttgtagatataaacacaataatagttcattcctagatggccaattttttcgtagcatctttgttcccttgttctcacaaatcatgcgactgtctcttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G51540.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51540.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 4
TGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGCCAGGTGAATCTTGGCACCCAAATGTGGTTAAACTGTCTCTTCATCACCCGGACGAGgtatgttgttcacaaaactaagataatccttgcataagtcttgtagatataaacacaataatagttcattcctagatggccaattttttcgtagcatctttgttcccttgttctcacaaatcatgcgactgtctcttgcag
||||||||||||||||||||||||||||   |||||| |   |   || || || ||||| ||| ||||| | || ||   ||| ||||| || || ||||||        || |    ||     |  ||  || |   || || | | ||||| |  ||||  | | |  ||| |   |   |||         | | ||| |||                                  
TGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGGATGGGGAGTCATGGCATCCAGATGTGATAAAGCTCCGTCTCCATCATCCTGATGAGgtaca------accatgtcaaccatgttttttaatgataattctaca-acaaacatag-aataaat-acttttagcttctctgctttggttatttgtgtatgtgcccga--------------------------------

upper sequence: AT5G51540.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA04G13080.1 (Glycine max), 5'ss of exon 7
TGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGCCAGGTGAATCTTGGCACCCAAATGTGGTTAAACTGTCTCTTCATCACCCGGACGAGgtatgttgttcacaaaactaagataatccttgcat--aagtcttgtagatataaacacaataatagttcattcctagatggccaattttttcgtagcatctttgttcccttgttctcacaaatcatgcgactgtctcttgcag
  | ||||| ||||||||||| |||| ||  || ||||| || || |||||||||||| | ||| ||||  |||||||||||||| |||| || || ||||||| | ||    |||  |  |        || ||    |||  || ||||      || | | |  |  ||   | ||    || |    |     || | |||                                      
GCAGTCATTGTTTGGTGCAACCTTTCGTATCATCCCTCTAGCACCTGGTGAATCTTGGGATCCACATGTACTTAAACTGTCTCTTGATCATCCTGAAGAGgtatttggtgtgaaaatttgtgtctgaaaatgaatttgggtccagtggata-----gcactgaaatgttgttaagaaatttttaagtcagacaatttatttctgt--------------------------------------

upper sequence: AT5G51540.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv16s0022g01260.t01 (Vitis vinifera), 5'ss of exon 11
TGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGCCAGGTGAATCTTGGCACCCAAATGTGGTTAAACTGTCTCTTCATCACCCGGACGAGgtatgttgttcacaaaactaagataatccttgcataagtcttgtagatataaacacaataatagttcattcctagatggccaattttttcgtagcatctttgttcccttgttctcacaaatcatgcgactgtctcttgcag
 ||||||||||||||||| || |||| | | || ||||| || ||||||||||| ||||| ||| ||||| ||||| |||| || ||||| || || ||||||     || |   ||  || | |     || |||  |||||| |||||  | | | |     || ||||  |  |||     | |||   | |   |  ||                                      
GGAATCATTATTTGGTGCCACCTTTCGTTCGATCCCTCTTGCACCAGGTGAATCCTGGCATCCAGATGTGCTTAAAATGTCACTACATCATCCTGAGGAGgtacac-atttattgaa--aaaacagaaaatgtatagctcttgttgatatgcaaaaagtgtatatttattctgacttggttgcatatttgaaaactcgtgggt--------------------------------------