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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgcttttgttatttatttttctattgttgtgctgcaaaagcacttcggcttctctatcttcattttgtatacttatgggagctttttggttctttttacttctgttgctaagacttctcttgtcatgctctgttggaatattcttgtacagGTTGTAGCATCATATTTTCCTCTGCCACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGC

Basic information

species Arabidopsis thaliana
transcript AT5G51540.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51540.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os06g47210.1 (Oryza sativa), 3'ss of exon 10
gtaagttgcttttgttatttatttttctattgttgtgctgcaaaagcacttcggcttctctatcttcattttgtatacttatgggagctttttggttctttttacttctgttgctaagacttc-tcttgtcatgctctgttggaatattcttgtacagGTTGTAGCATCATATTTTCCTCTGCCACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGC
                                                       |  | ||| | || |    |   | ||| | | |  |   ||     |  ||   |   ||| | ||   | | |   ||  | ||| ||||       |||||| || ||| |||| |||||  || | |||||  |  | ||| |||| ||||| || ||||||||||||||||| |||||||||   |||||| | | | 
------------------------------------------------------ttaatatatgt-caatgaaaaagttaatgtgcggtgatccctttaacatcattgcatacttaaaattttgcccttttgggcatttttgaaataccta---acagGTGGTTGCAGCATACTTTCCATTGTCCCAGTGCCTAAAGGGCTTAAACGTGCTGGTGGAATCATTATTTGGTGCCACATTTCATCAAATTCCTATGGGGG

upper sequence: AT5G51540.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G450659_T01 (Zea mays), 3'ss of exon 4
-------gtaagttgc--ttttgttatttatttttctattgttgtgctgcaaaagcacttcggcttctctatcttcattttgtatacttat-gggagctttttggttctttttacttctgttgctaagacttctcttgtcatgctctgttggaatattcttgtacagGTTGTAGCATCATATTTTCCTCTGCCACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGC
        |||  ||   | |   |  | |  |  || |   |       |    || ||| | ||    || | |    || || | | | | |  |  |      | ||||  |||  |   | |     | |    |   | |   ||         | | |||||| | |||  ||| |||||  || | |||||  |  ||||  |||| || || ||||||||||||||||||||||||||||||   |||||| |   | 
gtatgtgctaaactggcatctccgtgatgaaataactgtacctaaagcttatgttcaattctggtttgacatatactgcatgcatgcctgtagagtacagtccttacccttttgtttcgataagttattgacccccccccccccccctctgtttggcatctat-cagGTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTTCTCGTTGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGG

upper sequence: AT5G51540.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv16s0022g01260.t01 (Vitis vinifera), 3'ss of exon 10
gtaagttgcttttgttatttatttttctattgttgtgctgcaaaagcacttcggcttctctatcttcattttgtatacttatgg-gagctttttggttctttttacttctgttgctaagacttctcttgtcatgctctgttggaatattcttgtacagGTTGTAGCATCATATTTTCCTCTGCCACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGC
                                                       | ||  || |  | |   |||  || |   | | || |||      |||| || |     |    |   ||   ||||  |   |||     ||  | | |||||||||||||||||||||||| |||  || |||||||| ||  | |||||||| || ||||||||||||||||| || |||| | | || ||||| || |
-------------------------------------------------------tactgaatatatactagatatggttctcttgtgtttgttgaagacatttatttgttcccttctttcaaatccaatcattgttccttgat---tttgtatgcagGTTGTAGCATCATATTTTCCTTTGCATCAATGTATTGAGGGTTTGAAAGTGCTGGTGGAATCATTATTTGGTGCCACCTTTCGTTCGATCCCTCTTGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttctgttgctaagacttctcttgtcatgctctgttggaatattcttgtacagGTTGTAGCATCATATTTTCCTCTGCCACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGC
                                          tattctt  CT-rich tract
                                        aatattctt  TA-rich tract