1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acttgaaaagcttatcttctcaacccttaaacctgattggttactttggaatctgttaaggctctgaaattttcttaaacatttatctttgtggatgcagGACATTCTTGTTGGATTGCTACGTTTGCGAAAATGCGGGAAGAATGTAACGTGTCCAGAACTCATGGGAAAGTGTTCTGTTGTCCGTGAGCTTCATGTAT
species | Arabidopsis thaliana |
transcript | AT5G50320.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCCAATGAAGGTTGGGAGACGTTCCTNTCTTATGAAGATACACGCCAG GACATTCTTGTTGGATTGCTACGTTTGCGAAAATGCGGGAAGAATGTAACG
genomic: CTGCCAATGAAGGTTGGGAGACGTTCCTTTCTTATGAAGATACACGCCAGgtacaagctt ... gtggatgcagGACATTCTTGTTGGATTGCTACGTTTGCGAAAATGCGGGAAGAATGTAACG
ttggaatctgttaaggctctgaaattttcttaaacatttatctttgtggatgcagGACATTCTTGTTGGATTGCTACGTTTGCGAAAATGCGGGAAGAATGTAACGTGTCCAGAACTCATGGGAAAGTGTTCTGTTGTCCGTGAGCTTCATGTAT
tctttgt CT-rich tract
aaattttcttaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgaaaagcttatcttctcaacccttaaacctgattggttactttggaatctgttaaggctctgaaattttcttaaacatttatctttgtggatgcagGACATTCTTGTTGGATTGCTACGTTTGCGAAAATGCGGGAAGAATGTAACGTGTCCAGAACTCATGGGAAAGTGTTCTGTTGTCCGTGAGCTTCATGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - gaaaagc
- - - - - - - - - -tcaaccc
- - - - - - - - - - - - -cttaaac
- - - - - - - - - - - - - ttaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaat