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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATATCCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGgtacgatactcttgtgtttaaagatgaatgcttgcatgtcacaacggaaaaggttaaatcatattgaaaatttctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G50320.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os04g40840.1 (Oryza sativa), 5'ss of exon 5
AGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATATCCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGgtacga---tactcttgtgtttaaagat---gaatgcttg-catgtcacaacggaaaaggttaaatcatattgaaaatttctgcag-----------------------------------
| ||||| || |  ||| | ||  |||| |||||  |||| || ||||| || |||||||| ||||||||||| |||||||| || ||||||||||| ||||||     |  ||| |   || |   |   || |||| | | |||    || |    | ||   |  | | |||  |||  |                                      
AATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGgtacttattttatctagcacttgatattctagattgctagtcttgtgttcactgttgtgtttg--ttctctagaactttttagtgagaacttaggccctgccaatgtttgttgtgtttcag

upper sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G359735_T01 (Zea mays), 5'ss of exon 5
AGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATATCCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGgtacgatactcttgt-gtttaaagatgaatgct-tgcatgtcacaacggaaaaggttaaatcatat--tgaaaatttctgcag-----------------
| ||||| |  || ||| | ||  | || |||||  | || || ||||| || |||||||| ||||||||||| |||||||| || ||||||||||| ||||||    ||  | | || |   | | |||  |    | ||      ||  |   ||||||| ||   | | || || |  |                  
AATTTTTTGGAAGTCCAGCGTTCCGGGCTGATGGTCTGAAGATTTATCCAACACTTGTGATTCGTGGAACTGGTCTTTATGAGCTCTGGAAAACTGGCAGgtactcctctaatctagtgtcctgctaaatcttacttacgttcttggggttatttttaaatcttaaggtaagaacttatatactaatgacaagtcaggtt

upper sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G100872_T01 (Zea mays), 5'ss of exon 5
AGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATATCCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGgtacga---tactcttgtg---tttaaag--atgaatgct-tgcatgtcacaacggaaaaggttaaatc-atattgaaaatttctgcag--------------------------------------------------------
||||||| || || ||| | ||  | || |||||  | || || ||||| || ||||| || ||||||||||| |||||||| || ||||||||||| ||||||     || ||| ||    || |  |   |||||  | |  |  |  |   ||  |    ||| |  | | | | || ||||| |                                                         
AGTTTTTTGAAAGTCCAGCATTCCGGGCTGATGGTCTGAAGATTTATCCAACACTTGTTATTCGTGGAACTGGTCTTTATGAGCTCTGGAAAACTGGCAGgtacttctctaatctagtatcattcagtgtcttgaatcttataaacattcctgtggttatttctaattttacagtaagaacttctgtacttatgacaagggctcataaatccagggttaacccggtaacttttgctgtgctgcag

upper sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G18150.1 (Glycine max), 5'ss of exon 5
AGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATATCCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGgtacgatactcttgtgtttaaagatgaa-tgcttgcatgtcacaacggaaaaggttaaatcata----ttgaaaatttctgcag----------------------------------------
||||||| ||||| || |  ||||||||||||||| | ||||||||||| || ||||| || ||||||||||| |||||||| || ||||||||||| |||||     |  || | |||||   || | |||||     ||| |||     |  ||  ||| ||    ||   | ||| |  |                                         
AGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGgtatatatcaattttttttaatattggactgctttttcctca-aacttctcaattttcatcttagtatttattagtttttttaaatggtctgtagaaagtaaaaaaacattaatataattgtag

upper sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 5
AGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATATCCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGgtacg-at--actcttgtgtttaaagatgaatgcttgcatgtcacaacggaaaaggttaaatc---atattga--aaatttctgcag---------------------------------------------
||||||| ||||||||    ||||||||||||||| | ||||||||||| || ||||| || ||||||||||| |||||||| || ||||||||||| |||||   ||  | | || | ||   |   || |||||     ||| |||     |  ||  |||    |||| |  |  ||| |  |                                              
AGTTTTTTGAGAGCCCCATGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGgtatatatcaaatgttttcttattattggactgctttttcctca-aacatctcaattttcatcttagtatttattagttttttttaatgtcctgtagaaattaaaaaaaaaaattcattaatgtaattgtag

upper sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 5
AGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATATCCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGgtacgatactcttg-tgtttaa-agatgaatgcttgcatgtcacaacggaaaaggttaaatcatattgaaaattt--ctgcag
||||||| || |||||    |||||||| |||||| | ||||||||||| || ||||| || ||||||||||| |||||||| || |||||||| || |||||  ||    ||  |||| || |          |||||| | ||| |  ||||    ||| | ||  |     |   |||||
AGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGgtaaaatgtcattcctgttcaataagctggcaactgcatggctcaatgagaaagcaataattacatccatgtcctgtttgcag