1 5' 3' | 2 5' 3' | 3 5' 3' |
TCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctacatcttcatgaatctttccttttgtgaccatcatgatcatgatgctgagattgttaatggggtggtgcag
species | Arabidopsis thaliana |
transcript | AT5G47710.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTG GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCCEST: gi|124961685|gb|EL036185.1|EL036185
genomic: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: AAAGATCCTGCAGCAGTTCTCGCATTG GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCCEST: gi|164118771|gb|ES126219.1|ES126219
genomic: AAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: GTTCTCGCATTG GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCCEST: gi|19741251|gb|AU226604.1|AU226604
genomic: GTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: CAGTTCTCGCAGTTG GAAGTGTTTGATAAAGATAGGTTCAAGCCAGATGACAAGATGGGCCATGCEST: gi|164197872|gb|EL979607.1|EL979607
genomic: CAGTTCTCGCA-TTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGC
EST: GTTCTCGCATTG GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCCEST: gi|86074770|gb|DR370527.1|DR370527
genomic: GTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTG GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCCEST: gi|86024305|gb|DR320058.1|DR320058
genomic: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTG GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGG
genomic: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctacatcttcatgaatctttccttttgtgaccatcatgatcatgatgctgagattgttaatggggtggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG