Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAGGACTGCTCCAGGTGACTGTTATTCAAGGAAAGAAACTGGTGATCCGAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGgtatgtttggtcagtgtttttcattgttcttggcaactagaaccagtgtttgtgtttctaccaaggaaacaagtatctcgttgtgtttatttgtctgttgatgtgatgttttactgttttgaaaaccag

Basic information

species Arabidopsis thaliana
transcript AT5G47710.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125259893|gb|EL273978.1|EL273978
EST:     TCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAG                         TCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGGTGGAATGA
genomic: TCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGgtatgtttgg ... tgaaaaccagTCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTG-TGGAATGA
EST: gi|164049319|gb|ES201732.1|ES201732
EST:     GATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAG                         TCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAAT
genomic: GATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGgtatgtttgg ... tgaaaaccagTCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAAT
EST: gi|86074770|gb|DR370527.1|DR370527
EST:     GAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAG                         TCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAG
genomic: GAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGgtatgtttgg ... tgaaaaccagTCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAG
EST: gi|86024305|gb|DR320058.1|DR320058
EST:     GAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAG                         TCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAG
genomic: GAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGgtatgtttgg ... tgaaaaccagTCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAG