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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctacatcttcatgaatctttccttttgtgaccatcatgatcatgatgctgagattgttaatggggtggtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G47710.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076514|gb|DR372271.1|DR372271
EST:     ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|124961685|gb|EL036185.1|EL036185
EST:     AAAGATCCTGCAGCAGTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: AAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|164118771|gb|ES126219.1|ES126219
EST:     GTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: GTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|19741251|gb|AU226604.1|AU226604
EST:     CAGTTCTCGCAGTTG                         GAAGTGTTTGATAAAGATAGGTTCAAGCCAGATGACAAGATGGGCCATGC
genomic: CAGTTCTCGCA-TTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGC
EST: gi|164197872|gb|EL979607.1|EL979607
EST:     GTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: GTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|19875004|gb|AU235835.1|AU235835
EST:     ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|86074770|gb|DR370527.1|DR370527
EST:     ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGCGAAGACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctacatcttcatgaatctttccttttgtgaccatcatgatcatgatgctgagattgttaatggggtggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG