Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctacatcttcatgaatctttccttttgtgaccatcatgatcatgatgctgagattgttaatggggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCCTCTCTCAGCCTTCAACCGCTTATCTCAGTTGCCAGACTAAGACACGTAG

Basic information

species Arabidopsis thaliana
transcript AT5G47710.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G47710.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv00s0531g00030.t01 (Vitis vinifera), 3'ss of exon 2
---------------------gtatgtctacatcttcatgaatctttccttttgtgaccatcatgatcatgatgc-tgagattgttaatggggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCCTCTCTCAGCCTTCAACCGCTTATCTCAGTTGCCAGACTAAGACACGTAG
                       |||     |   |  | |     |  |||  | |   | ||  |  || ||| | |       |      |    |||||||| || ||||||||  | |||||||||||||||||||||||||||||    ||||||||||||||  |  |||||| ||| ||||| || ||  |  
atcatgggtatcctcttgggacaatgcggtgaggatgctaatgacattgtttcataaat-ttatacttgtgctgcataatgaccaaaccctcttcccacagGAAGTATTCGATAAAGACCGATTCAAGGCAGATGACAAGATGGGCCATGCTCACCTCAGCCTTCAACCCATAGTCTCAGCTGCAAGACTGAGGCAGATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076514|gb|DR372271.1|DR372271
EST:     ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|124961685|gb|EL036185.1|EL036185
EST:     AAAGATCCTGCAGCAGTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: AAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|164118771|gb|ES126219.1|ES126219
EST:     GTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: GTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|19741251|gb|AU226604.1|AU226604
EST:     CAGTTCTCGCAGTTG                         GAAGTGTTTGATAAAGATAGGTTCAAGCCAGATGACAAGATGGGCCATGC
genomic: CAGTTCTCGCA-TTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGC
EST: gi|164197872|gb|EL979607.1|EL979607
EST:     GTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: GTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|19875004|gb|AU235835.1|AU235835
EST:     ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
EST: gi|86074770|gb|DR370527.1|DR370527
EST:     ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTG                         GAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC
genomic: ATGAGGAACTGAACTTTACTCTGAAAGATCCTGCAGCAGTTCTCGCATTGgtatgtctac ... ggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttttgtgaccatcatgatcatgatgctgagattgttaatggggtggtgcagGAAGTGTTTGATAAAGATAGGTTCAAGGCAGATGACAAGATGGGCCATGCCTCTCTCAGCCTTCAACCGCTTATCTCAGTTGCCAGACTAAGACACGTAG
                                    tgttaat  putative branch site (score: 3)
                                  attgttaat  TA-rich tract