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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTCGCGGCTCTAAGAAAAAAGTACCCTTATGCCAAAATTATATATGCTGATTATTACAGTTCTGCCATGCAATTCTTCAACTCACCTTCCAAATACGgtaatccgacttccatattatttcctataactagtagacatgttcgatatacaaatcaattttgatactttgttcgatatgtattgtttttctttttgtaatatag

Basic information

species Arabidopsis thaliana
transcript AT5G45910.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085566|gb|DR381325.1|DR381325
EST:     TGATTATTACAGTTCTGCCATGCAATTCTTCAACTCACCTTCCAAATACG                         GTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGAT
genomic: TGATTATTACAGTTCTGCCATGCAATTCTTCAACTCACCTTCCAAATACGgtaatccgac ... tgtaatatagGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGAT
EST: gi|164180377|gb|ES084517.1|ES084517
EST:     ATGCAATTCTTCAACTCACCTTCCAAATACG                         GTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAG
genomic: ATGCAATTCTTCAACTCACCTTCCAAATACGgtaatccgac ... tgtaatatagGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAG
EST: gi|164001979|gb|ES110659.1|ES110659
EST:     TACAGTTCTGCCATGCAATTCTTCAACTCACCTTCCAAATACG                         GTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGAT
genomic: TACAGTTCTGCCATGCAATTCTTCAACTCACCTTCCAAATACGgtaatccgac ... tgtaatatagGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGAT