1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatccgacttccatattatttcctataactagtagacatgttcgatatacaaatcaattttgatactttgttcgatatgtattgtttttctttttgtaatatagGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGATACAACGTGCAACCAAACGTGCGGTGCGGAGAAAAGGGTTCAACCACTTG
species | Arabidopsis thaliana |
transcript | AT5G45910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATTATTACAGTTCTGCCATGCAATTCTTCAACTCACCTTCCAAATACG GTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGATEST: gi|164180377|gb|ES084517.1|ES084517
genomic: TGATTATTACAGTTCTGCCATGCAATTCTTCAACTCACCTTCCAAATACGgtaatccgac ... tgtaatatagGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGAT
EST: ATGCAATTCTTCAACTCACCTTCCAAATACG GTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGEST: gi|164001979|gb|ES110659.1|ES110659
genomic: ATGCAATTCTTCAACTCACCTTCCAAATACGgtaatccgac ... tgtaatatagGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAG
EST: TACAGTTCTGCCATGCAATTCTTCAACTCACCTTCCAAATACG GTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGAT
genomic: TACAGTTCTGCCATGCAATTCTTCAACTCACCTTCCAAATACGgtaatccgac ... tgtaatatagGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGAT
caaatcaattttgatactttgttcgatatgtattgtttttctttttgtaatatagGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGATACAACGTGCAACCAAACGTGCGGTGCGGAGAAAAGGGTTCAACCACTTG
ttttgat putative branch site (score: 4)
tattgtttttcttttt putative PPT
atatgtattgtttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatccgacttccatattatttcctataactagtagacatgttcgatatacaaatcaattttgatactttgttcgatatgtattgtttttctttttgtaatatagGTTTCACTGGAAGTGTCCTAAAGGCATGTTGTGGAGGAGGAGATGGAAGATACAACGTGCAACCAAACGTGCGGTGCGGAGAAAAGGGTTCAACCACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA