Sequence
atgc intronic sequence ATGC exonic sequenceGTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCAAAGAATGACAGAAGGgtgagtttattgttttgcacctgaacaagttgaatgcttaaaaaaaaatgactctattctgtgttgtttgaaccactatgctgtagtctggctagtattt...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G45190.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G45190.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 3
-------GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCAAAGAATGACAGAAGGgtgagtttattgttttgcacctgaacaagttgaatgcttaaaaaaaaatgactctattctgtgttgtttgaaccactatgctgtagtctggctagtattt
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GCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCTTCGACAATCTCATGCAAAGAATGACCGAAGGgtgggttgttgcactttcaaatagatattatgtaggcattttgtctctccagagtttgagttgcaatttaatttagtgtgatatgtttgtgttcttgcca
upper sequence: AT5G45190.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 2
-------GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCAAAGAATGACAGAAGGgtgagtttattgttttgcacctgaaca--agttgaatgcttaaaaaaaaatgactctattctgtgttgtttgaaccactatgctgtagtctggctagtattt
|| || ||||| || || |||||||| |||||||| ||||| |||| ||||| ||||||||||||||| |||||||| ||| | || || | | | | || || | || || || ||| || | | | | | | | |
GCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCTTCGACAATCTCATGCAAAGAATGACCGAAGGgtgggttgttgcactttcaaatagatattatgtgggcattttacctctccagagcttaagttgca--atttaaattagtgtagcatgtttgtgttcttgcca
upper sequence: AT5G45190.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv00s0125g00270.t01 (Vitis vinifera), 5'ss of exon 2
-------GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCAAAGAATGACAGAAGGgtgagtttattgttttgcacctgaacaagttgaatgcttaaaaaaaaatgactctattct---gtgttgtttgaaccactatgctgtagtctggctagtattt
|| || ||||| ||||| ||||| || |||||||| ||||| || ||||||| || |||||||||||||||||||||||| | | | | | ||| || || |||| | | | ||| |||||| || | | | || | | ||
ACCCCAGGTAACTATAGCCACAGCAATAATATTTTGTCATCGGTTCTTTCTTTGCCAATCTCACGCAAAGAATGACAGAAGGgtgagtg-actactctctttccaaactgatt--atttttaaccatcttgaatcttgttcataagtgttgatttagttttatcattttggttcaaggatgagttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164218279|gb|ES043229.1|ES043229EST: GCCAATCACATGCAAAGAATGACAGAAGG ACCATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAAACTCCA
genomic: GCCAATCACATGCAAAGAATGACAGAAGGgtgagtttat ... gtttctgcagACCATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAAACTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCAAAGAATGACAGAAGGgtgagtttattgttttgcacctgaacaagttgaatgcttaaaaaaaaatgactctattctgtgttgtttgaaccactatgctgtagtctggctagtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa