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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAgtgtaagttctctatcacctcatcttagatttctttctgtgcattgttcctttaactgcttcaag

Basic information

species Arabidopsis thaliana
transcript AT5G45190.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G45190.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S119_132V6.1 (Physcomitrella patens), 5'ss of exon 1
GAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAgtgtaagttctctatc--acctcatcttagatttctttctgtgcattgttcctttaactgcttcaag-----------------------------------
  | || || |||||||||||||| || ||| ||||||| || || ||| | || ||||| ||||| || ||||| || || ||||||||| |||| ||||||||||  |   |        ||   |    |  ||| | |   |      |  || |      ||                                   
--AATCGCCCTCAAGGTTGGATGGAATCGACATAAAGAAAGAGACTTACTTTCGGAAATCGTACTGCACTTTTTTACAAGATTTGGGCATGCGATTAAAAGTgtaagacccagacttggtgccagtctgtcctcatttattttagtcagcaatcaaattatggttagttttcattttgactctgttactctctgttttggat

upper sequence: AT5G45190.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S86_187V6.1 (Physcomitrella patens), 5'ss of exon 2
GAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAAgtgtaagttctctatcacctcatcttagatttct----ttctgtgcat-----tgttc-ctttaactgcttcaag-----------------------------
  |||| || || || |||||||| |||||| | |||||||| |||||| |||| || ||||||||||| |||||||| ||  | |||||| | |||||||||||||  ||| |  | ||  | || | ||  |    |   ||  ||     |||||  |||   | | ||| |                             
--ATTCGCCTTCCAGATTGGATGGAATTGACATCAAGAAGGAGACATACTTCCGGAAGTCCTACTGTACGTTTTTGCAAGATCTTGGCATGCGGTTGAAAGTgtaagaactcga--atctggtgttggtttattggaatagcgtatatatctgtgttcatttttttttcctcatgtccacttacgtttcaatatctctttaatc