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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtcattgatctagttttcttcaagatagctagggttctttctgactgcatattcttaatcttttacatattttggtagGTGGTGGACGAAATTAGACCATACATCAAACCTTCCACCAAACTTCAGAGAGAGAACTGTAGAGACATGGTTTGCAGCATTGATGATGTACTTCGAGCCA

Basic information

species Arabidopsis thaliana
transcript AT5G44630.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164235565|gb|ES008412.1|ES008412
EST:     ATTACTTCCAAGAATTAAAAAACCATCACAAT                         GTGGTGGACGGAATTAGACCATACATCAAACCTTCCACCAAACTTCAGAGA
genomic: ATTACTTCCAAGAATT-AAAAACCATCACAATgtatatgtca ... attttggtagGTGGTGGACGAAATTAGACCATACATCAAACCTTCCACCAAACTTCAGAGA
EST: gi|164060956|gb|ES158941.1|ES158941
EST:     CTTGCAGCTTCATTACTTCCAAGAATTAAAAACCATCACAAT                         GTGGTGGACGGAATTAGACCATACATCAAACCTTCCACCAAACCTCAGAGA
genomic: CTTGCAGCTTCATTACTTCCAAGAATTAAAAACCATCACAATgtatatgtca ... attttggtagGTGGTGGACGAAATTAGACCATACATCAAACCTTCCACCAAACTTCAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatagctagggttctttctgactgcatattcttaatcttttacatattttggtagGTGGTGGACGAAATTAGACCATACATCAAACCTTCCACCAAACTTCAGAGAGAGAACTGTAGAGACATGGTTTGCAGCATTGATGATGTACTTCGAGCCA
                         atattcttaatctttt  TA-rich tract