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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcccatttatatctttccgactatcttttaacaatcaatgcacatttgtgtattccttatacgtacgttagatggctatataaagatctttgacttgtatcaacttccagGATTTTGATGTCCTTGAAAGAGAGATTGAAGTACTAAAGCCTAAAGTAAGAGAGAACATATTCGTGTCGTCTTCCACAGACAAAGACGCGATGAAAAAGA

Basic information

species Arabidopsis thaliana
transcript AT5G44630.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054202|gb|DR349959.1|DR349959
EST:     CATCCTCCCAATGGGGTGATCAGTTCCTCAAGTTTTCCATTGCTGATTCG                         GATTTTGATGTCCTTGAAAGAGAGATTGAAGTACTAAAGCCTAAAGTAAGA
genomic: CATCCTCCCAATGGGGTGATCAGTTCCTCAAGTTTTCCATTGCTGATTCGgtgagcccat ... caacttccagGATTTTGATGTCCTTGAAAGAGAGATTGAAGTACTAAAGCCTAAAGTAAGA
EST: gi|86054200|gb|DR349957.1|DR349957
EST:     CATCCTCCCAATGGGGTGATCAGTTCCTCAAGTTTTCCATTGCTGATTCG                         GATTTTGATGTCCTTGAAAGAGAGATTGAAGTACTAAAGCCTAAAGTAAGA
genomic: CATCCTCCCAATGGGGTGATCAGTTCCTCAAGTTTTCCATTGCTGATTCGgtgagcccat ... caacttccagGATTTTGATGTCCTTGAAAGAGAGATTGAAGTACTAAAGCCTAAAGTAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatacgtacgttagatggctatataaagatctttgacttgtatcaacttccagGATTTTGATGTCCTTGAAAGAGAGATTGAAGTACTAAAGCCTAAAGTAAGAGAGAACATATTCGTGTCGTCTTCCACAGACAAAGACGCGATGAAAAAGA
                                ctttgac  putative branch site (score: 4)
                                                cttcc  putative PPT
                     tatataaagatcttt  TA-rich tract