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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGGTATGGCATCATCGAATCATTCAAGCATCGGTGTTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCATCCCgtgagtgcaccttttttggtttcaattttgtttattagattttgattatgacataacccaaaaaagttttcgaataaattttggataattaacaatatttcattacttgacggttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G44190.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125072002|gb|EL136848.1|EL136848
EST:     ACAATTAGGACCCACTAATCCTCCCATCGACATTCATCCC                         TCGAATGAGAGCATAGATGCAGCTATTGGGGACGTTATAT
genomic: ACAATTAGGACCCACTAATCCTCCCATCGACATTCATCCCgtgagtgcac ... acggttgcagTCGAATGAGAGCATAGATGCAGCTATTGGGGACGTTATAT
EST: gi|124716196|gb|EH807598.1|EH807598
EST:     CCCACTAATCCTCCCATCGACATTCATCCC                         TCGAATGAGAGCATAGATGCAGCTATTGGGGACGTTATATCAAAGCCGTGG
genomic: CCCACTAATCCTCCCATCGACATTCATCCCgtgagtgcac ... acggttgcagTCGAATGAGAGCATAGATGCAGCTATTGGGGACGTTATATCAAAGCCGTGG
EST: gi|125003854|gb|EL076123.1|EL076123
EST:     TTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCATCCC                         TCGAATGAGAGCA
genomic: TTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCATCCCgtgagtgcac ... acggttgcagTCGAATGAGAGCA
EST: gi|124907393|gb|EH981473.1|EH981473
EST:     GACAATTAGGACCCACTAATCCTCCCATCGACATTCATCCC                         TCGAATGAGAGCATAGATGCAGCTATTGGGGA
genomic: GACAATTAGGACCCACTAATCCTCCCATCGACATTCATCCCgtgagtgcac ... acggttgcagTCGAATGAGAGCATAGATGCAGCTATTGGGGA