1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGTGGTTTTAGGGACAAAACGGTGCGTCGAGGCAAACGTAAAGGGAAGAAAAGTAAAGATTGTTTATCCGATGAGAACGATATTAAGAAAAAACCTAAGgtgtgtttatttcccaattatccatgttagattagtttattttttttcttctttaaaggtaaaaaatcccattaagaaatcaccaacctttttaaggatt...
species | Arabidopsis thaliana |
transcript | AT5G44190.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGTTTATCCGATGAGAACGATATTAAGAAAAAACCTAAG GTGGATTGGACGCCGGAGTTACACCGGAAATTTGTACAAGCGGTGGAGCAAEST: gi|124970059|gb|EL043916.1|EL043916
genomic: TTGTTTATCCGATGAGAACGATATTAAGAAAAAACCTAAGgtgtgtttat ... ggcaaatcagGTGGATTGGACGCCGGAGTTACACCGGAAATTTGTACAAGCGGTGGAGCAA
EST: AAAGTAAAGATTGTTTATCCGATGAGAACGGTATTAAGAAAAAACCTAAG GTGGATTGGACGCCGGAGTTACACCGGAAATTTGTACAAGCGGTGGAGCAAEST: gi|125305502|gb|EL319587.1|EL319587
genomic: AAAGTAAAGATTGTTTATCCGATGAGAACGATATTAAGAAAAAACCTAAGgtgtgtttat ... ggcaaatcagGTGGATTGGACGCCGGAGTTACACCGGAAATTTGTACAAGCGGTGGAGCAA
EST: AAGTAAAGATTGTTTATCCGATGAGAACGATATTAAGAAAAAACCTAAAG GTGGATTGGACGCCGGAGTTACACCGGAAATTTGTEST: gi|125020705|gb|EL092974.1|EL092974
genomic: AAGTAAAGATTGTTTATCCGATGAGAACGATATTAAGAAAAAACCTAA-Ggtgtgtttat ... ggcaaatcagGTGGATTGGACGCCGGAGTTACACCGGAAATTTGT
EST: AAAGTAAAGATTGTTTATCCGATGAGAACGATATTAAGAAAAA-CCTAAG GTGGATTGGACGCCGGAGTTACACCGGA
genomic: AAAGTAAAGATTGTTTATCCGATGAGAACGATATTAAGAAAAAACCTAAGgtgtgtttat ... ggcaaatcagGTGGATTGGACGCCGGAGTTACACCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGGTTTTAGGGACAAAACGGTGCGTCGAGGCAAACGTAAAGGGAAGAAAAGTAAAGATTGTTTATCCGATGAGAACGATATTAAGAAAAAACCTAAGgtgtgtttatttcccaattatccatgttagattagtttattttttttcttctttaaaggtaaaaaatcccattaagaaatcaccaacctttttaaggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa