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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTGCTGCAAAGGCTTGTTGCCAAGGAGCTGAAATCTTATCCGGAAGCCCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAGgtatgtcgccatgtcgattcttcaaatttcttatcatagttaaaagttttggtgttagatcaactgttaattttttgtttcctattaag

Basic information

species Arabidopsis thaliana
transcript AT5G44070.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428044|gb|EG470636.1|EG470636
EST:     CCCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAG                         GTCCTGATGACTCTGAAGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATG
genomic: CCCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAGgtatgtcgcc ... tcctattaagGTCCTGATGACTCTGAAGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATG
EST: gi|164005466|gb|ES195192.1|ES195192
EST:     CCCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAG                         GTCCTGATGACTCTGAAGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATG
genomic: CCCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAGgtatgtcgcc ... tcctattaagGTCCTGATGACTCTGAAGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATG
EST: gi|125277766|gb|EL291851.1|EL291851
EST:     CCCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAG                         GTCCTGATGACTCTGAAGGCACG
genomic: CCCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAGgtatgtcgcc ... tcctattaagGTCCTGATGACTCTGAAGGCACG
EST: gi|86078631|gb|DR374388.1|DR374388
EST:     CCCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAG                         GTCCTGATGACTCTGAAGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATG
genomic: CCCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAGgtatgtcgcc ... tcctattaagGTCCTGATGACTCTGAAGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATG
EST: gi|125261850|gb|EL275935.1|EL275935
EST:     CCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAAG                         GTCCTGACGACTCTGAAGGCACGGTGGTGACTGGAGTTG
genomic: CCATCAAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAA-Ggtatgtcgcc ... tcctattaagGTCCTGATGACTCTGAAGGCACGGTGGTGACTGGAGTTG