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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTGgtatgttcgatgcaatataggttctctttaagtttgctaatatctttttcttcaattttgctattctattaatgcaattttctcactcacaatctcttccacatgtattgaatgaacttgagatccttatgagcattttggtaagacaaaacttgtggattggtgataattttgcttttatatatctataccag

Basic information

species Arabidopsis thaliana
transcript AT5G44070.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043106|gb|DR338861.1|DR338861
EST:     TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTG                         AGCTGCAAGGATGA
genomic: TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTGgtatgttcga ... tctataccagAGCTGCAAGGATGA
EST: gi|164047797|gb|ES187423.1|ES187423
EST:     TCTATACTCTG                         AGCTGCAAGGATGAAAGCTGGATCGAAATAGCCAAGTATTTGAAGGAAGAT
genomic: TCTATACTCTGgtatgttcga ... tctataccagAGCTGCAAGGATGAAAGCTGGATCGAAATAGCCAAGTATTTGAAGGAAGAT
EST: gi|124730079|gb|EH821481.1|EH821481
EST:     TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTG                         AGCTGCAAGGA
genomic: TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTGgtatgttcga ... tctataccagAGCTGCAAGGA
EST: gi|163982803|gb|ES096721.1|ES096721
EST:     TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTG                         AGCTGCAAGGACGAAAGCTGGATC
genomic: TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTGgtatgttcga ... tctataccagAGCTGCAAGGATGAAAGCTGGATC