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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCTCCGATGGGTATGATATTCATTCCGTGCTACAAAGgtatatagatgcgaatcaattagaccgtgatcttaatcaaatctgcatcccccattaaggtttttattggttgcgtgatcttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G43600.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43600.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 11
GATATCTCCGATGGGTATGATATTCATTCCGTGCTACAAAGgtatatagatgcgaatcaattag-----accgtgat-cttaatcaaatctgcatcccccattaaggtttttattggttgcgtgatcttttgcag------
 |||||||| |||||||||||||||||||| || |||||||||||       |   ||  || |     || |  || |||    ||   |  || ||   || |  || |     |  || ||||   || | |      
AATATCTCCAATGGGTATGATATTCATTCCATGTTACAAAGgtatgagctatcatctctctttgctacaactgaaattctttcataaccttttataccatgtttaaattatggaatgaagcatgattggtttctgattgca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125264027|gb|EL278112.1|EL278112
EST:     GATATCTCCGATGGGTATGATATTCATTCCGTGCTACAAAG                         GATACAGCCATAAA
genomic: GATATCTCCGATGGGTATGATATTCATTCCGTGCTACAAAGgtatatagat ... tcttttgcagGATACAGCCATAAA