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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatagatgcgaatcaattagaccgtgatcttaatcaaatctgcatcccccattaaggtttttattggttgcgtgatcttttgcagGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACATGGCTAATGGAGTAAAAGTACTCTCCCTCACTCTGGCTAAGCTCTCTTTAGACTGATG

Basic information

species Arabidopsis thaliana
transcript AT5G43600.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125264027|gb|EL278112.1|EL278112
EST:     GATATCTCCGATGGGTATGATATTCATTCCGTGCTACAAAG                         GATACAGCCATAAA
genomic: GATATCTCCGATGGGTATGATATTCATTCCGTGCTACAAAGgtatatagat ... tcttttgcagGATACAGCCATAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcaaatctgcatcccccattaaggtttttattggttgcgtgatcttttgcagGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACATGGCTAATGGAGTAAAAGTACTCTCCCTCACTCTGGCTAAGCTCTCTTTAGACTGATG
 tcttaat  putative branch site (score: 3)
                                             tcttttgc  putative PPT
                    attaaggtttttatt  TA-rich tract