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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATAACAACGATAGGTGAGGAACACATGGCAGCACTTGGGGGTTCCTTGGAAAGTATAGCAGAGGCTAAATCTGGAATTATTAAACACGGTCGCCCAgttaggtggtttttatgtgtttgcttatcttataacctttgaattataagcacattgatagatagagttttacgtgttgttatgaaacttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G41480.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41480.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv16s0050g02490.t01 (Vitis vinifera), 5'ss of exon 6
GGTCATAACAACGATAGGTGAGGAACACATGGCAGCACTTGGGGGTTCCTTGGAAAGTATAGCAGAGGCTAAATCTGGAATTATTAAACACGGTCGCCCAgttaggtggtttttatgtgtttgcttatcttataacctttgaattataagcacattgatagatagagttttacgtgttgttatgaaacttgtag----------
 || |||||||| ||||| ||||||||  |||| ||||| ||||||||| ||||||| || |||  ||| || || ||||| || ||||| ||| |||||||||||||||| |    ||  |  |||   |  |  |||||  | |  | | ||    ||  || | ||  |     | || |  | || |             
AGTTATAACAACAATAGGGGAGGAACATTTGGCTGCACTAGGGGGTTCCCTGGAAAGCATTGCAATGGCAAAGTCAGGAATAATCAAACAAGGTTGCCCAgttaggtggttctc-cctgcatatttactctgca--ctttgggtgaatatctcac-attaattataattgcattcaatcttctacatctagcttttccaactcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485042|gb|EG527634.1|EG527634
EST:     TGGAAAGTATAGCAGAGGCTAAATCTGGAATTATTAAACACGGTCGCCCA                         GTGGTTTTAGGTGGACCGTTTCTTCCTCATATCGAGGGCATTCTCCGTTCT
genomic: TGGAAAGTATAGCAGAGGCTAAATCTGGAATTATTAAACACGGTCGCCCAgttaggtggt ... aaacttgtagGTGGTTTTAGGTGGACCGTTTCTTCCTCATATCGAGGGCATTCTCCGTTCT
EST: gi|19877471|gb|AU238302.1|AU238302
EST:     TGGAAAGTATAGCAGAGGCTAAATCTGGAATTATTAAACACGGTCGCCCA                         GTGGTTTTAGGTGGACCGTTTCTTCCTCATATCAAGGGCATTCTCCGTTCT
genomic: TGGAAAGTATAGCAGAGGCTAAATCTGGAATTATTAAACACGGTCGCCCAgttaggtggt ... aaacttgtagGTGGTTTTAGGTGGACCGTTTCTTCCTCATATCGAGGGCATTCTCCGTTCT
EST: gi|116485040|gb|EG527632.1|EG527632
EST:     TGGAAAGTATAGCAGAGGCTAAATCTGGAATTATTAAACACGGTCGCCCA                         GTGGTTTTAGGTGGACCGTTTCTTCCTCATATCGA
genomic: TGGAAAGTATAGCAGAGGCTAAATCTGGAATTATTAAACACGGTCGCCCAgttaggtggt ... aaacttgtagGTGGTTTTAGGTGGACCGTTTCTTCCTCATATCGA