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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtattgactttggattaaagttttattgtattttgagtttgaatctttcatggttacttacatgagttttttgttcttcattgcagCCCACATATTCTGAGTATCAAAGAACGGATTTCTTGTAATGGAGAACCTGTCTCTGCTTCCACTCTTAATGATCTTTTCTATTCAGTCAAACCGATTCTT

Basic information

species Arabidopsis thaliana
transcript AT5G41480.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485042|gb|EG527634.1|EG527634
EST:     CTCTCTAATATCTTACGAGCTGGAGGATATTCTGTTGGTTGTTATTCTAG                         CCCACATATTCTGAGTATCAAAGAACGGATTTCTTGTAATGGAGAACCTGT
genomic: CTCTCTAATATCTTACGAGCTGGAGGATATTCTGTTGGTTGTTATTCTAGgtaaagtatt ... ttcattgcagCCCACATATTCTGAGTATCAAAGAACGGATTTCTTGTAATGGAGAACCTGT
EST: gi|116485040|gb|EG527632.1|EG527632
EST:     CTCTCTAATATCTTACGAGCTGGAGGATATTCTGTTGGTTGTTATTCTAG                         CCCACATATTCTGAGTATCAAAGAACGGATTTCTTGTAATGGAGAACCTGT
genomic: CTCTCTAATATCTTACGAGCTGGAGGATATTCTGTTGGTTGTTATTCTAGgtaaagtatt ... ttcattgcagCCCACATATTCTGAGTATCAAAGAACGGATTTCTTGTAATGGAGAACCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgagtttgaatctttcatggttacttacatgagttttttgttcttcattgcagCCCACATATTCTGAGTATCAAAGAACGGATTTCTTGTAATGGAGAACCTGTCTCTGCTTCCACTCTTAATGATCTTTTCTATTCAGTCAAACCGATTCTT
                       tacttac  putative branch site (score: 1)
                                   ttttttgttcttcatt  putative PPT
                                   ttttttgtt  TA-rich tract