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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctgccatataaactctttcgtgtttgtctgatgaagtaagtatggttttaatcttattcttcttcttggttatagGATCATGGAACAGATGAGCGTAATGGTATGGTTTCCTGGAATCAACCGAATTTTGTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTATTGTGGTCAC

Basic information

species Arabidopsis thaliana
transcript AT5G38580.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgtctgatgaagtaagtatggttttaatcttattcttcttcttggttatagGATCATGGAACAGATGAGCGTAATGGTATGGTTTCCTGGAATCAACCGAATTTTGTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTATTGTGGTCAC
                         ttttaat  putative branch site (score: 3)
                         ttttaatcttattctt  CT-rich tract
                         ttttaatcttattctt  TA-rich tract