Sequence
atgc intronic sequence ATGC exonic sequencegttcgggggtaattcttccatttaacaactgcacgttgtccaatctcatttatagaactctctgttaataattttggtattgtgtgcagGATGGGTTTGATGATGGTTATGTTTTCAACCAGCTTAAACATCTGAACCTATGTGTGTGCAAAGAGGAGTCGTCGAATCTCCTTGGCCAGTTACTCAAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G38580.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtccaatctcatttatagaactctctgttaataattttggtattgtgtgcagGATGGGTTTGATGATGGTTATGTTTTCAACCAGCTTAAACATCTGAACCTATGTGTGTGCAAAGAGGAGTCGTCGAATCTCCTTGGCCAGTTACTCAAAG
tgttaat putative branch site (score: 3)
ttaataattttggtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcgggggtaattcttccatttaacaactgcacgttgtccaatctcatttatagaactctctgttaataattttggtattgtgtgcagGATGGGTTTGATGATGGTTATGTTTTCAACCAGCTTAAACATCTGAACCTATGTGTGTGCAAAGAGGAGTCGTCGAATCTCCTTGGCCAGTTACTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG