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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAAGGTGAAGAGCCTATTAGTTTTGGTGATAATGCTAGTCTTCTGAATTATGGACTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaattcttgtcaaactgcattatgtagctctttacctttggttcatgtactctaatgccaatcttttctctttgatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G37480.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125053620|gb|EL124640.1|EL124640
EST:     TTGTTGATGCTGATCTACCTG                         GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
genomic: TTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
EST: gi|125203995|gb|EL218949.1|EL218949
EST:     TTATGGACTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTG                         GAACGGAGAAAAACAATCGACAACAG
genomic: TTATGGACTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAG
EST: gi|164050735|gb|ES005962.1|ES005962
EST:     CTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTG                         GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
genomic: CTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
EST: gi|164194396|gb|ES057420.1|ES057420
EST:     GGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTG                         GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
genomic: GGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
EST: gi|125285580|gb|EL299665.1|EL299665
EST:     ATGGACTTGGTTTGGTAAGTTGAAGACAGTTGTTGATGCTGATCTACCTG                         GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTA
genomic: ATGGACTTGG-TTGG-AAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTA
EST: gi|125252076|gb|EL266161.1|EL266161
EST:     ATGCTGATCTACCTG                         GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
genomic: ATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGGAAGGTGAAGAGCCTATTAGTTTTGGTGATAATGCTAGTCTTCTGAATTATGGACTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaattcttgtcaaactgcattatgtagctctttacctttggttcatgtactctaatgccaatcttttctctttgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT