1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatttaattcttgtcaaactgcattatgtagctctttacctttggttcatgtactctaatgccaatcttttctctttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
species | Arabidopsis thaliana |
transcript | AT5G37480.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGATGCTGATCTACCTG GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACGEST: gi|125203995|gb|EL218949.1|EL218949
genomic: TTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
EST: TTATGGACTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTG GAACGGAGAAAAACAATCGACAACAGEST: gi|164050735|gb|ES005962.1|ES005962
genomic: TTATGGACTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAG
EST: CTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTG GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACGEST: gi|164194396|gb|ES057420.1|ES057420
genomic: CTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
EST: GGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTG GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACGEST: gi|125285580|gb|EL299665.1|EL299665
genomic: GGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
EST: ATGGACTTGGTTTGGTAAGTTGAAGACAGTTGTTGATGCTGATCTACCTG GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTAEST: gi|125252076|gb|EL266161.1|EL266161
genomic: ATGGACTTGG-TTGG-AAGTTGAAGACAGTTGTTGATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTA
EST: ATGCTGATCTACCTG GAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
genomic: ATGCTGATCTACCTGgtaatttaat ... tttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
agctctttacctttggttcatgtactctaatgccaatcttttctctttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
ccaatcttttctcttt CT-rich tract
aatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttaattcttgtcaaactgcattatgtagctctttacctttggttcatgtactctaatgccaatcttttctctttgatgcagGAACGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA