Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTGTTGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaacaattaattttatgatctagtttcaactctctctttttttctctagttttgaatattttcttgataaaatcctttatatatatag

Basic information

species Arabidopsis thaliana
transcript AT5G23820.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86027517|gb|DR323270.1|DR323270
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|86027528|gb|DR323281.1|DR323281
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|86027524|gb|DR323277.1|DR323277
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|86027552|gb|DR323305.1|DR323305
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|125198044|gb|EL212998.1|EL212998
EST:     CCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: CCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|125164459|gb|EL191156.1|EL191156
EST:     CGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: CGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|86027555|gb|DR323308.1|DR323308
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|125195648|gb|EL210602.1|EL210602
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAG
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAG
EST: gi|86081443|gb|DR377200.1|DR377200
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|86027535|gb|DR323288.1|DR323288
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|124847279|gb|EH931716.1|EH931716
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|125232083|gb|EL246168.1|EL246168
EST:     TAAATTTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TAAA-TTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|86027546|gb|DR323299.1|DR323299
EST:     TTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: TTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|124963597|gb|EL037922.1|EL037922
EST:     ACCCAACCATCACTAT-AATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
genomic: ACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGAGATGGGG
EST: gi|125165148|gb|EL191562.1|EL191562
EST:     TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAA                         GCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGA
genomic: TGGGCCTCACGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAgtaagtaaca ... atatatatagGCAAAAACATCCCCGCGGGAACCCTTGTGTACGTAGCCTTTAGA