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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATGGCGATGTCTCATGTCCAGCCTATGCTACTCCTCCTCGTATCACTCTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatctatttgttaagtcttcagttacttttctatatgatttttgtgtgtttattagtttataaatgaattataaattcagatagaccttgatttc...

Basic information

species Arabidopsis thaliana
transcript AT5G23820.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124827976|gb|EH912842.1|EH912842
EST:     TTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: TTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|86027517|gb|DR323270.1|DR323270
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|124706933|gb|EH798335.1|EH798335
EST:     CCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: CCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|125033065|gb|EL105334.1|EL105334
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGT
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGT
EST: gi|125023115|gb|EL095384.1|EL095384
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTA
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTA
EST: gi|86027528|gb|DR323281.1|DR323281
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|86027524|gb|DR323277.1|DR323277
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|124946136|gb|EL022084.1|EL022084
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGACATTGTGGTCTCTCCATCT
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAG-CATTGTGGTCTCTCCATCT
EST: gi|125018912|gb|EL091181.1|EL091181
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|86027552|gb|DR323305.1|DR323305
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|124754223|gb|EH844353.1|EH844353
EST:     TTCTTCTTACCGGCTTTGCGTGGCGCCTATAGATTTCGAATACTGCGCCA                         AAAGTGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTC
genomic: TTCTTCTTACCGGCTTTGCGTGGCGCC-ATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTC
EST: gi|124848533|gb|EH932970.1|EH932970
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAGTGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTC
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTC
EST: gi|124962406|gb|EL036831.1|EL036831
EST:     GGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: GGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|86027555|gb|DR323308.1|DR323308
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|124737695|gb|EH829097.1|EH829097
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTC
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTC
EST: gi|125027027|gb|EL099296.1|EL099296
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCAT
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCAT
EST: gi|86081443|gb|DR377200.1|DR377200
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|86027535|gb|DR323288.1|DR323288
EST:     CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: CTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG
EST: gi|124890337|gb|EH969239.1|EH969239
EST:     TGCGTGGCGCCATAGATTTCGAATACTGCGCCA                         AAAATGGAAACGATTACGGAGCCGTCACTAGCATTGTGGTCTCTCCATCTG
genomic: TGCGTGGCGCCATAGATTTCGAATACTGCGCCAgtaagtatct ... actgttgcagAAAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTG