Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTAGCGTGGGCAATTGCGTATAATGTCATCTCAATCCCTATAGCTGCAGGTGTCTTGCTTCCTCAGTATGATTTCGCCATGACACCTTCGTTATCTGgtaagcggcccctatacgattccagttaattagttacaaaacagtttgttccacttccattctagtagattcatacaatccgatcatatatcatatatcatatggttacttaccattaatttgatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G21930.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125211767|gb|EL226721.1|EL226721
EST:     AGGTGTCTTGCTTCCTCAGTATGATTTCGCCATGACACCTTCGTTATCTG                         GTGGACTAATGGCATTGAGCTCGATCTTT
genomic: AGGTGTCTTGCTTCCTCAGTATGATTTCGCCATGACACCTTCGTTATCTGgtaagcggcc ... ttgatttcagGTGGACTAATGGCATTGAGCTCGATCTTT
EST: gi|19800011|gb|AU231301.1|AU231301
EST:     AGGTGTCTTGCTTCCTCAGTATGATTTCGCCATGACACCTTCGTTATCTG                         GTGGACTAATGGCATTGAGCTCGATCTTTGTCGTTTCAAATTCATTACTTC
genomic: AGGTGTCTTGCTTCCTCAGTATGATTTCGCCATGACACCTTCGTTATCTGgtaagcggcc ... ttgatttcagGTGGACTAATGGCATTGAGCTCGATCTTTGTCGTTTCAAATTCATTACTTC