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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaattcacgaagtgaatgtaggattaaattcgggtagaaagaaattttggagaaagaaaatattgagcagataatcaactcgtttttttgtgtgtatcagGTAGTTTCCTGCCCCTGTGCACTGGGCCTTGCAACACCAACTGCCATATTAATTGGCACCTCTCTTG

Basic information

species Arabidopsis thaliana
transcript AT5G21930.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G21930.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv04s0008g01960.t01 (Vitis vinifera), 3'ss of exon 10
gaattcacgaagtga-at--gtaggattaaattcgggtagaaagaaattttggagaaagaaaatattgagcagataatcaactcgtttttttgtgtgtatcagGTAGTTTCCTGCCCCTGTGCACTGGGCCTTGCAACACCAACTGCCATATTAATTGGCACCTCTCTTG
   | ||  || ||| ||   || | |       |   |  | | |   || ||   | ||    |||   |  ||| |   |  ||||||  | | | |||||| || ||||| || || |||||||| ||||| ||||| ||||| || ||| |||||||||||||||
---tgcagaaattgacattgatatgctagggaatgaaaatgaggcatgcttagatgcaaaagtagttgtaaaattaaactttttcttttttgctttttgtcagGTGGTCTCCTGTCCATGCGCACTGGGGCTTGCCACACCTACTGCAATCTTAGTTGGCACCTCTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124788609|gb|EH878288.1|EH878288
EST:     CTGATGGAGATGCTTTGGCCTTAAGCTTAAAACTGGCTGTGGATGTCTTG                         GTAGTTTCCTG
genomic: CTGATGGAGATGCTTTGGCCTTAAGCTTAAAACTGGCTGTGGATGTCTTGgtgagtgaga ... tgtgtatcagGTAGTTTCCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggagaaagaaaatattgagcagataatcaactcgtttttttgtgtgtatcagGTAGTTTCCTGCCCCTGTGCACTGGGCCTTGCAACACCAACTGCCATATTAATTGGCACCTCTCTTG
                                     tttttttgt  CT-rich tract
     agaaagaaaatatt  TA-rich tract