Sequence
atgc intronic sequence ATGC exonic sequence...tcttgagattatccaggttgattatatgatcaatctcacaagtttctcttcttcctgatgtattatttgactaataataactttcaatttttattttcagCTCAAGCACCTGCCGCACCACAACCAGTGACACTCTCGGAACCACCATGTTCAACCAGTAGTGATTTAGAAATTCTGCCTCCTCTCTCTCAGCAACAAGT
Basic information
species | Arabidopsis thaliana |
transcript | AT5G20300.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86072734|gb|DR368491.1|DR368491EST: GGGAAGTGACCCTTTTTTCCGTGACCCTCATCAAGAACAAGATAACCACT CTCAAGCACCTGCCGCACCACAACCAGTGACACTCTCGGAACCACCATGTT
genomic: GGGAAGTGACCCTTTTTTCCGTGACCCTCATCAAGAACAAGATAACCACTgtatggtatc ... ttattttcagCTCAAGCACCTGCCGCACCACAACCAGTGACACTCTCGGAACCACCATGTT
EST:
gi|86072733|gb|DR368490.1|DR368490EST: GGGAAGTGACCCTTTTTTCCGTGACCCTCATCAAGAACAAGATAACCACT CTCAAGCACCTGCCGCACCACAACCAGTGACACTCTCGGAACCACCATGTT
genomic: GGGAAGTGACCCTTTTTTCCGTGACCCTCATCAAGAACAAGATAACCACTgtatggtatc ... ttattttcagCTCAAGCACCTGCCGCACCACAACCAGTGACACTCTCGGAACCACCATGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcttcttcctgatgtattatttgactaataataactttcaatttttattttcagCTCAAGCACCTGCCGCACCACAACCAGTGACACTCTCGGAACCACCATGTTCAACCAGTAGTGATTTAGAAATTCTGCCTCCTCTCTCTCAGCAACAAGT
taataac putative branch site (score: 1)
tttttattttc putative PPT
atgtattatttgacta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcttgagattatccaggttgattatatgatcaatctcacaagtttctcttcttcctgatgtattatttgactaataataactttcaatttttattttcagCTCAAGCACCTGCCGCACCACAACCAGTGACACTCTCGGAACCACCATGTTCAACCAGTAGTGATTTAGAAATTCTGCCTCCTCTCTCTCAGCAACAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC