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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggtgttttgcatattattttagcaagtgaacaagattgccacttgtggctgagacgaaatgtggcataactttaatatcatcttcttgctgttgggcagATAGTTAAATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAATGGCATCATCTAGACCACTTTTGGGAAGTGACCCTTTTTTCCGTGACCC

Basic information

species Arabidopsis thaliana
transcript AT5G20300.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072734|gb|DR368491.1|DR368491
EST:     GCCAACACAAG                         ATAGTTAAATGAAAGGCTTCAGAGACTGGGTTTTCGCTCTATCCAACTCAA
genomic: GCCAACACAAGgttctctccg ... tgttgggcagATAGTTAAATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAA
EST: gi|86072733|gb|DR368490.1|DR368490
EST:     GCCAACACAAG                         ATAGTTAAATGAAAGGCTTCAGAGACTGGGTTTTCGCTCTATCCAACTCAA
genomic: GCCAACACAAGgttctctccg ... tgttgggcagATAGTTAAATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggctgagacgaaatgtggcataactttaatatcatcttcttgctgttgggcagATAGTTAAATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAATGGCATCATCTAGACCACTTTTGGGAAGTGACCCTTTTTTCCGTGACCC
                                    tcttcttgct  CT-rich tract
                     ataactttaatatcat  TA-rich tract