Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTTGCAAAAAGGCAAATGACATGGTTCCGGTGTGAGCCTATGTACCACTGGCTCAATGCTTCCAAACCTCTGgtatatgtttaagagggctctctctgttctattcagtctcttatatactatcaaccaagcattgtgataattcattgttctggcag

Basic information

species Arabidopsis thaliana
transcript AT5G20040.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20040.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv19s0014g01630.t01 (Vitis vinifera), 5'ss of exon 10
AAACTTTGCAAAAAGGCAAATGACATGGTTCCGGTGTGAGCCTATGTACCACTGGCTCAATGCTTCCAAACCTCTGgtatatgtttaagagggctctctctgtt--ctattcagtctcttatatactatcaac-caagcattgtgataat-tcattgttctggcag-----------
|||||||||||||||||||||||||||||||||   ||||| ||| || ||||||||  ||||||| | ||| ||||||| | |||   |    | ||||| |    |  | | | | |  | | |||| |   |    | || |  ||| ||||    |||| |            
AAACTTTGCAAAAAGGCAAATGACATGGTTCCGTAATGAGCTTATTTATCACTGGCTTGATGCTTCTAGACCCCTGgtatgtcttttgcacctttttctctttaggttgctaaatttatcttgt-ctatgagtgcctttactgggtaaatatcatccaactggaaaattttcacttc