1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatttgtcgactttgttgctattgcaaatgccactagtgtagatgcttctgatactgatgtatgtaaaggaagaaacttacacatttttccatgctttgttagACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCAAGCTACCAAAGATATTCTTAATAGAGGGCGTGTTCCCATTGTTACGGGTGGAACTGGATTGTA
species | Arabidopsis thaliana |
transcript | AT5G20040.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG ACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCA-GCTACCAAAGATAEST: gi|86052820|gb|DR348577.1|DR348577
genomic: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGgtatttgtcg ... gctttgttagACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCAAGCTACCAAAGATA
EST: GTGGTGCCTCDNCATCTTATCTACATTTTGCATCCGTCTCAAG ACTACTCTGTGGGGCAATTTTATGATGATEST: gi|86052814|gb|DR348571.1|DR348571
genomic: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGgtatttgtcg ... gctttgttagACTACTCTGTGGGGCAATTTTATGATGAT
EST: GTGGTRCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG A-TACTCTGTGGGGEST: gi|86052817|gb|DR348574.1|DR348574
genomic: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGgtatttgtcg ... gctttgttagACTACTCTGTGGGG
EST: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG ACTACTCTGTGGGGCAAT
genomic: GTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGgtatttgtcg ... gctttgttagACTACTCTGTGGGGCAAT
ctgatactgatgtatgtaaaggaagaaacttacacatttttccatgctttgttagACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCAAGCTACCAAAGATATTCTTAATAGAGGGCGTGTTCCCATTGTTACGGGTGGAACTGGATTGTA
aacttac putative branch site (score: 2)
tttttccatgcttt putative PPT
tatgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtcgactttgttgctattgcaaatgccactagtgtagatgcttctgatactgatgtatgtaaaggaagaaacttacacatttttccatgctttgttagACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCAAGCTACCAAAGATATTCTTAATAGAGGGCGTGTTCCCATTGTTACGGGTGGAACTGGATTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA