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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatagttacaaatatattgacatacttccaccaatgtatagttgtggtgttgatgctaactaatcatggagggaattttcagGGCCATTTTCAAAGACAGCAGTGAACTACAACGCGGGGACAAAGACACCGATGTCGAATGTAGTAATGGGCGTTTGCATGATGCTTGTGCTTCTCTTCCT

Basic information

species Arabidopsis thaliana
transcript AT5G19600.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055105|gb|DR350862.1|DR350862
EST:     TGGTCTTATGAACGTAATTGGCTCCTTCACTTCTTGCTACTTGACAACGG                         GGCCATTTTCAAAGACAGCAGTGAACTACAACGCGGGGACAAAGACACCGA
genomic: TGGTCTTATGAACGTAATTGGCTCCTTCACTTCTTGCTATTTGACAACGGgtaaatagtt ... gaattttcagGGCCATTTTCAAAGACAGCAGTGAACTACAACGCGGGGACAAAGACACCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaccaatgtatagttgtggtgttgatgctaactaatcatggagggaattttcagGGCCATTTTCAAAGACAGCAGTGAACTACAACGCGGGGACAAAGACACCGATGTCGAATGTAGTAATGGGCGTTTGCATGATGCTTGTGCTTCTCTTCCT
                                                ttttc  CT-rich tract
     aatgtata  TA-rich tract