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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttctacatacaatctctatccttacgttaaaaaatttaacttttaagttatttaaagaaacaacaaaaataataggtctttaacaaaaaaacaaaaaacaaaaataatagGTTGGGGATATTGGTGGATTTCTTGTCACACTCGACCATAACGGGCTTCATGGGCGGTACCGCAATCATCATTCTCCTACAACAGCTTAAGGGCATCTTT

Basic information

species Arabidopsis thaliana
transcript AT5G19600.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19600.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv11s0016g04170.t01 (Vitis vinifera), 3'ss of exon 2
gtttttctacatacaatctctatccttacgttaaaaaat-ttaacttttaagttatttaaagaaacaacaaaaataataggtctttaacaaaaaaacaaaaaacaaaaataatagGTTGGGGATATTGGTGGATTTCTTGTCACACTCGACCATAACGGGCTTCATGGGCGGTACCGCAATCATCATTCTCCTACAACAGCTTAAGGGCATCTTT
                          || | | |   || || | |  |   || |||   | | |  |||| ||| ||||     || ||| | |     |       |   ||  ||||||| |||||||||||||| || || || ||||| || ||||||||||| || || |||| ||||||    || |||||||| |||||  |  ||
-------------------------gtaagatgatcgatattcattaatcgtttgtttcctggatc--caaatata-tagg-----aagaaacataacggtattggctgtg-cagACTGGGGATTTTGGTGGATTTCTTATCGCATTCCACCATCACCGGCTTCATGGGAGGCACAGCAACCATCATCAGTCTCCAACAGCTCAAGGGTTTTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaacaacaaaaataataggtctttaacaaaaaaacaaaaaacaaaaataatagGTTGGGGATATTGGTGGATTTCTTGTCACACTCGACCATAACGGGCTTCATGGGCGGTACCGCAATCATCATTCTCCTACAACAGCTTAAGGGCATCTTT
                      ctttaac  putative branch site (score: 3)
                     tctttaacaaaaaaac  TA-rich tract