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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTGGCCAACATGCCTGTTGAGCTGGAGGGCTATATCCGCCCAGGATGTACAATTTTGACTGTCTTTATAGCAATGCCAGAGATTATGTGGGCGAAGgtacatcctgttatcttttactcatcattttcatgttcatgatgccgcgacacaacataagaaattgtttattttcagtaggttgtagtctcgagatatg...

Basic information

species Arabidopsis thaliana
transcript AT5G18830.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18830.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os05g33810.1 (Oryza sativa), 5'ss of exon 5
ATGGTTGGCCAACATGCCTGTTGAGCTGGAGGGCTATATCCGCCCAGGATGTACAATTTTGACTGTCTTTATAGCAATGCCAGAGATTATGTGGGCGAAGgtacatcctgttatcttttactcatcattttcatgttcatgatgccgcgacacaacataagaaattgtttattttcagtaggttgtagtctcgagatatg----------
 ||| |  | | |||||||||||| |||||||||||||| || || || ||||||||||| ||||| ||| | ||||||||| |   ||||||||  ||||||     ||    ||| |||| |  | |  ||  | |||  | |   | |  ||       | || |||   | ||      || || |     | ||           
GTGGCTTTCTAGCATGCCTGTTGAACTGGAGGGCTATATTCGTCCTGGTTGTACAATTTTAACTGTATTTGTTGCAATGCCACAACATATGTGGGACAAGgta-----tggatgcttgtactaa--aatgccaaat-cat--tacttagtccaaaggaggacatttttttggatgcatccaaatgaagacctaccaaatattggtctttc

upper sequence: AT5G18830.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 5
ATGGTTGGCCAACATGCCTGTTGAGCTGGAGGGCTATATCCGCCCAGGATGTACAATTTTGACTGTCTTTATAGCAATGCCAGAGATTATGTGGGCGAAGgtacatcctgttatcttttactcatca-ttttcatgttcatgatgccgc-gacacaacataagaaattgtttattttcagtaggttgtagtctcgagatatg
 |||||||| | ||||||| ||||| |||||||||||||||| || || ||||  || || ||  | ||||| ||||||||| || |||||||||  ||||||  |   |  ||  ||||   | || ||||   | | |   ||  |   |        |  | |||||| ||      |   | ||| |  |     |  
GTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGgtatgtttagagatgctttatatagcactttttggggttacagtgaggttaatgttgttgactacattgttaatgggtgatgattggtatttgcatacaa--