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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttctcttcagcctctaacatcaaaaacatcggtgcacttaatgaactaatttcccatttcattgcagTGTCCAACTGGTCGGATCTCTTTTAAGCTCTACGATTGGAATCCAGCGGAGTTCCCACGGAGACTACGTCATCAA

Basic information

species Arabidopsis thaliana
transcript AT5G18830.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18830.3 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G28460.1 (Glycine max), 3'ss of exon 3
gtgagtttctcttc--------agcctctaacatc----aaaaacatcgg---tgcacttaatg--aactaatttcccatttcattgcagTGTCCAACTGGTCGGATCTCTTTTAAGCTCTACGATTGGAATCCAGCGGAGTTCCCACGGAGACTACGTCATCAA
||| ||| | |||         |   | ||  ||     |  |||  ||         |||  |    || |||     ||   ||| |||| | ||| |||||||| ||||||||||| || ||||||||||| ||||| || ||  | || ||||| ||||||
gtgggttgccctttttgttccaaatttatattattttgtaggaactacgaaatcatggttagcgtttgctgattgaaagttcatttgtagTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaacatcaaaaacatcggtgcacttaatgaactaatttcccatttcattgcagTGTCCAACTGGTCGGATCTCTTTTAAGCTCTACGATTGGAATCCAGCGGAGTTCCCACGGAGACTACGTCATCAA
                               aactaat  putative branch site (score: 2)
                                     tttcccatttcatt  CT-rich tract
                         ttaatgaactaattt  TA-rich tract