1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTTATCCAAACAAATAACAAGATTGCCATTGGAGCAGCCATATCTCCTCTTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAGgttagctagtctttctcttacgacatctctatttatcatctatataacttaatatagaaacatgcttatacacgtacactttcgtattatggatgccaca...
species | Arabidopsis thaliana |
transcript | AT5G18460.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAG GATCCGAAAATGGGGAATTGGTGGATEST: gi|116464715|gb|EG507307.1|EG507307
genomic: TTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAGgttagctagt ... ggatttgcagGATCCGAAAATGGGGAATTGGTGGAT
EST: TTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAG GATCCGAAAATGGGGAATTGGTGGATGGGTTTAGGGGATAGCACACTAGTCEST: gi|116435455|gb|EG478047.1|EG478047
genomic: TTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAGgttagctagt ... ggatttgcagGATCCGAAAATGGGGAATTGGTGGATGGGTTTAGGGGATAGCACACTAGTC
EST: TTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAG GATCCGAAAATGGGGAATTGGTGGATGGGTTTAGGGGATAGCACACTAGTC
genomic: TTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAGgttagctagt ... ggatttgcagGATCCGAAAATGGGGAATTGGTGGATGGGTTTAGGGGATAGCACACTAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTATCCAAACAAATAACAAGATTGCCATTGGAGCAGCCATATCTCCTCTTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAGgttagctagtctttctcttacgacatctctatttatcatctatataacttaatatagaaacatgcttatacacgtacactttcgtattatggatgccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaaac