1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttttgtcctgaaatgaatagtacaaaataagtcgttttgattatgataagaagccatttttacgatgagaagaaattttgattatgataaataatgcagAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAAAAGATGATGATGTTAAAGAAGCAGAGAATGTATTGGAAGGTGCATGGCAAATGTGGCACGTGAACG
species | Arabidopsis thaliana |
transcript | AT5G18460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAGCAGCCAGCTTTGGATCATCCACTCTTAAAGCATCACAAGATTCAG AAAGCACCGAAGAAAATGCCGAAGATGAAGGGAAAAGATGATGATGTTAAAEST: gi|86052896|gb|DR348653.1|DR348653
genomic: GAAAGCAGCCAGCTTTGGATCATCCACTCTTAAAGCATCACAAGATTCAGgtattgctga ... aataatgcagAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAAAAGATGATGATGTTAAA
EST: GAAAGCAGCCAGCTTTGGATCATCCACTCTTAAAGCATCACAAGATTCAG AAAGCACCGAAGAAAATGCCGAAGATGAAGGGAAAAGATGATGATGTTAAAEST: gi|125137196|gb|EL177081.1|EL177081
genomic: GAAAGCAGCCAGCTTTGGATCATCCACTCTTAAAGCATCACAAGATTCAGgtattgctga ... aataatgcagAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAAAAGATGATGATGTTAAA
EST: TCCACTCTTAAAGCATCACAAGATTCAG AAAGCACCGAAGAAAATGCCGAAGATGAAGGGAAAAGATGATGATGTTAAA
genomic: TCCACTCTTAAAGCATCACAAGATTCAGgtattgctga ... aataatgcagAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAAAAGATGATGATGTTAAA
gataagaagccatttttacgatgagaagaaattttgattatgataaataatgcagAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAAAAGATGATGATGTTAAAGAAGCAGAGAATGTATTGGAAGGTGCATGGCAAATGTGGCACGTGAACG
ttttgat putative branch site (score: 4)
agaagaaattttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgtcctgaaatgaatagtacaaaataagtcgttttgattatgataagaagccatttttacgatgagaagaaattttgattatgataaataatgcagAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAAAAGATGATGATGTTAAAGAAGCAGAGAATGTATTGGAAGGTGCATGGCAAATGTGGCACGTGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - ctgaaat
- - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - gttttga
- - - - - - - - - - - - - - - - - - - - - - - ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaat