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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGATCCTGGACCATCTAGTCACATTTTTGCAGACTATTCCCTGAAAAAGCTATTGCATGATCCTGATGTTCCTCGTGGGTGTGATCCTAACTCTCCAGAgtacgtaacctatgagtcaggggattctgtttctttctaactgttatatacagttgaatctgatctatttctttcaagcttccagttttcctccaagcttaatgttctgtgttataattaatgtgccaatttgaagttgattgtatgaatgatcattgagtcaaataatcttatag

Basic information

species Arabidopsis thaliana
transcript AT5G18420.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124737598|gb|EH829000.1|EH829000
EST:     GTGGGTGTGATCCTAACTCTCCAGA                         GTTTGATGTGCAAGCTGGAG
genomic: GTGGGTGTGATCCTAACTCTCCAGAgtacgtaacc ... aatcttatagGTTTGATGTGCAAGCTGGAG
EST: gi|125184213|gb|EL199167.1|EL199167
EST:     ATCCTAACTCTCCAGA                         GTTTGATGTGCAAGCTGGAGTGAATCCCAGAATTGGATCTGGTGATAGGGA
genomic: ATCCTAACTCTCCAGAgtacgtaacc ... aatcttatagGTTTGATGTGCAAGCTGGAGTGAATCCCAGAATTGGATCTGGTGATAGGGA