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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATATTTCCTATTCATCATCCTTGGTCCTTCAAGTCTGTCCGCAAATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGCAATTGgtgagtttagatttctttctataactgatttcaagtcatgtaatctgctctcttagctatacgttttttattctgtttgaacttgacctcgtag

Basic information

species Arabidopsis thaliana
transcript AT5G16890.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G139691_T02 (Zea mays), 5'ss of exon 3
ACATATTTCCTATTCATCATCCTTGGTCCTTCAAGTCTGTCCGCAAATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGCAATTGgtgagtttagatttctttctataactgatttcaagtcatgtaatctgctctcttagctatacgttttttattctgtttga-acttgacctcgtag
|  |  ||||| |||||||||| ||||| || ||||| ||||| | || ||| || || ||||| |||||| |||| |||||||||||||| || || |||||    | |  ||| || | |  | | |  ||  | |  ||         ||| |  || | |   ||||||  |||   |  | |  ||    
ATGTCATTCCTGTTCATCATCCATGGTCATTTAAGTCAGTCCGGAGATCTGTCAAGAAAGCAATATGGCTTCTACCTGATATGGACTCCACCGGGAACTGgtg----tggtattcattgtttgccagttgccactttacctaggaaaactacttgg--atgcatcacttattcactttaccatcttatttcag--

upper sequence: AT5G16890.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv19s0014g00560.t01 (Vitis vinifera), 5'ss of exon 3
ACATATTTCCTATTCATCATCCTTGGTCCTTCAAGTCTGTCCGCAAATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGCAATTGgtgagtttagatttctttctataactgatttcaagtcatgtaatctgctctct---tagctatacgttttttattctgtttgaacttgacctcgtag
||||| ||||  |||||||||| ||||| |||||| |||| || ||||   |||| || ||||| ||||| |||||||| ||||||||||| || || |||| | |       || | || | |    | | || |     | |    | |     || ||        || ||  | ||| || ||          
ACATACTTCCAGTTCATCATCCATGGTCTTTCAAGACTGTTCGGAAATCCATGAAGAATGCAATTTGGCTGTTACCAGACATGGACTCCACAGGGAACTGgtcactaatttactcatactgtgatgtgtctaaatttgatgagttcattattgatataactgctgaaacttgatcattttttaatttag--------