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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTTACTTTCGATCTTCTCTGGTTATTTCACAATACTTACAAAGAGACTTCGAATGCTACCTCTAATGGTAGCCCTGTGCATCGTCTAATCGAACAGgtactataagaagcttaattgatcattttggttggttgttagatttcttgtgccattggtaattttggttggacgattgaattgaattgaagccaattcaaccgagaatcgtgattaggtttgtggttttgttcaattgtttgttcttcacttgtgtagcctgaataaacttgtctatttttttttctatattgcag

Basic information

species Arabidopsis thaliana
transcript AT5G16890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16890.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv19s0014g00560.t01 (Vitis vinifera), 5'ss of exon 1
GAAGTTTACTTTCGATCTTCTCTGGTTATTTCACAATACTTACAAAGAGACTTCGAATGCTACCTCTAATGGTAGCCCTGTGCATCGTCTAATCGAACAGgtactataagaagcttaattgatcattttggttggttgttagatttcttgtgc-cattggtaattttggttggacgattgaattgaattgaagccaattcaaccgagaatcgtgattaggtttgtggttttgttcaattgtttgttcttcacttgtgtagcctgaataaacttgtctatttttttttctatattgcag
||||||||| |  ||||| |||||||| ||||  || ||||| || ||||||||||||  ||| || ||||||||||| |||||||| || || || |||||| | ||   || ||        || | | || |   | || | |    |   || ||| | |||     | || |  | | || |||       ||| ||  | |  | |                                                                                      
GAAGTTTACGTATGATCTCCTCTGGTTGTTTCGGAACACTTATAAGGAGACTTCGAATCGTACTTCCAATGGTAGCCCCGTGCATCGCCTGATTGAGCAGgtattgtagtgagattgga-----atctggatttgaattcagctctggcatttgcaatggcagtttc---cgaactagagcactgtatt----ttgattgaattgtgctttg--------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124739479|gb|EH830641.1|EH830641
EST:     GTCTAATCGAACAG                         CATTCTATTGACTATTGGCTTTGGGCTGATCTGATATCTCCTGAATCTGAA
genomic: GTCTAATCGAACAGgtactataag ... tatattgcagCATTCTATTGACTATTGGCTTTGGGCTGATCTGATATCTCCTGAATCTGAA