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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCGTGATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGTTACGACGATATGTGGGCTGGTTGGTGCATCAAGgtaatttcttcttattcccttgtaagactcataattgagtatagctaaatatgaagcacatgctctgtactaagcgatacctccatttggggttgaatcttttatag

Basic information

species Arabidopsis thaliana
transcript AT5G15650.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164179200|gb|ES067998.1|ES067998
EST:     TGGTCGTTACGACGATATGTGGGCTGGTTGGTGCATCAAG                         GTGATCTGTGACCACTTGAGCT
genomic: TGGTCGTTACGACGATATGTGGGCTGGTTGGTGCATCAAGgtaatttctt ... tcttttatagGTGATCTGTGACCACTTGAGCT
EST: gi|164237601|gb|ES002549.1|ES002549
EST:     CGATATGTGGGCTGGTTGGTGCATCAAG                         GTGATCTGTGACCACTTGAGCTTGGGAGTGAAGACCGGTTTACCGTATATC
genomic: CGATATGTGGGCTGGTTGGTGCATCAAGgtaatttctt ... tcttttatagGTGATCTGTGACCACTTGAGCTTGGGAGTGAAGACCGGTTTACCGTATATC
EST: gi|124812700|gb|EH897566.1|EH897566
EST:     TGGTTGGTGCATCAAG                         GTGATCTGTGACCACTTGAGCTTGGGAGTGAAGACCGGTTTACCGTATATC
genomic: TGGTTGGTGCATCAAGgtaatttctt ... tcttttatagGTGATCTGTGACCACTTGAGCTTGGGAGTGAAGACCGGTTTACCGTATATC