1 5' 3' |
GCCAAGAAGTATACAGTCGGCGAGAACAAGTTTTGGAACCCCAACATTAACTACACCATCTGGGCTCAGGGCAAGCATTTCTACCTCGGAGACTGGCTCTgtatgttctctctttatctcttctttctcggatctgtttatattagatctgatttcaaacgggcttcgttttgaatctggtaatcgtttcaaagttttca...
species | Arabidopsis thaliana |
transcript | AT5G15350.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTACACCATCTGGGCTCAGGGCAAGCATTTCTACCTCGGAGACTGGCTCT ATTTCGTGTTCGAEST: gi|86079314|gb|DR375071.1|DR375071
genomic: CTACACCATCTGGGCTCAGGGCAAGCATTTCTACCTCGGAGACTGGCTCTgtatgttctc ... tttttgtcagATTTCGTGTTCGA
EST: TCTACCTCGGAGACTGGCTCT ATTTCGTGTTCGACAGAAACCAGCACAATATTCTTGAAGTGAACAAGACTGEST: gi|116469022|gb|EG511614.1|EG511614
genomic: TCTACCTCGGAGACTGGCTCTgtatgttctc ... tttttgtcagATTTCGTGTTCGACAGAAACCAGCACAATATTCTTGAAGTGAACAAGACTG
EST: AAGCATTTCTACCTCGGAGACTGGCTCT ATTTCGTGTTCGACAGAAGCCAGCACAATATTCTTGAAGTGAACAAGACTG
genomic: AAGCATTTCTACCTCGGAGACTGGCTCTgtatgttctc ... tttttgtcagATTTCGTGTTCGACAGAAACCAGCACAATATTCTTGAAGTGAACAAGACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAGAAGTATACAGTCGGCGAGAACAAGTTTTGGAACCCCAACATTAACTACACCATCTGGGCTCAGGGCAAGCATTTCTACCTCGGAGACTGGCTCTgtatgttctctctttatctcttctttctcggatctgtttatattagatctgatttcaaacgggcttcgttttgaatctggtaatcgtttcaaagttttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctcg