Sequence
atgc intronic sequence ATGC exonic sequence...agctcaatctcttactcgtttcagctgaaagatcttgtttcaaatcaaaaatgtgtcaaatctttggactaatgtttttatggtctcttctttttgtcagATTTCGTGTTCGACAGAAACCAGCACAATATTCTTGAAGTGAACAAGACTGACTATGAAGGATGTATCGCCGACCACCCAATACGCAACTGGACACGTGG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G15350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125281005|gb|EL295090.1|EL295090EST: CTACACCATCTGGGCTCAGGGCAAGCATTTCTACCTCGGAGACTGGCTCT ATTTCGTGTTCGA
genomic: CTACACCATCTGGGCTCAGGGCAAGCATTTCTACCTCGGAGACTGGCTCTgtatgttctc ... tttttgtcagATTTCGTGTTCGA
EST:
gi|86079314|gb|DR375071.1|DR375071EST: TCTACCTCGGAGACTGGCTCT ATTTCGTGTTCGACAGAAACCAGCACAATATTCTTGAAGTGAACAAGACTG
genomic: TCTACCTCGGAGACTGGCTCTgtatgttctc ... tttttgtcagATTTCGTGTTCGACAGAAACCAGCACAATATTCTTGAAGTGAACAAGACTG
EST:
gi|116469022|gb|EG511614.1|EG511614EST: AAGCATTTCTACCTCGGAGACTGGCTCT ATTTCGTGTTCGACAGAAGCCAGCACAATATTCTTGAAGTGAACAAGACTG
genomic: AAGCATTTCTACCTCGGAGACTGGCTCTgtatgttctc ... tttttgtcagATTTCGTGTTCGACAGAAACCAGCACAATATTCTTGAAGTGAACAAGACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaaatgtgtcaaatctttggactaatgtttttatggtctcttctttttgtcagATTTCGTGTTCGACAGAAACCAGCACAATATTCTTGAAGTGAACAAGACTGACTATGAAGGATGTATCGCCGACCACCCAATACGCAACTGGACACGTGG
gactaat putative branch site (score: 2)
tttttatggtctcttc CT-rich tract
actaatgtttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agctcaatctcttactcgtttcagctgaaagatcttgtttcaaatcaaaaatgtgtcaaatctttggactaatgtttttatggtctcttctttttgtcagATTTCGTGTTCGACAGAAACCAGCACAATATTCTTGAAGTGAACAAGACTGACTATGAAGGATGTATCGCCGACCACCCAATACGCAACTGGACACGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - ctgaaag
- - - - - - - - - - - - - - - - - - - -tcaaatc
- - - - - - - - - - - - - - - - - - - - - - -caaaaat