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gttaaagaaaacaatgttatctcatgtgtatttgattgttatctagtgttcacagtccaaatttagccttattctcatgggaaataaaattctctatgttcagAACTGCTCATGAGCTTGGAGTGGAAACAACGGTTATTGAAA
species | Arabidopsis thaliana |
transcript | AT5G14060.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAG AACTGCTCATGAGCTTGGAGTGGAAACAACGGTTATTGAAAEST: gi|124748372|gb|EH838502.1|EH838502
genomic: AACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAGgttaaagaaa ... ctatgttcagAACTGCTCATGAGCTTGGAGTGGAAACAACGGTTATTGAAA
EST: AACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAG AACTGCTCATGAGEST: gi|116430984|gb|EG473576.1|EG473576
genomic: AACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAGgttaaagaaa ... ctatgttcagAACTGCTCATGAG
EST: AACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAG AACTGCTCATGAGCTTGGAGTGGAAACAACGGTTATTGAAA
genomic: AACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAGgttaaagaaa ... ctatgttcagAACTGCTCATGAGCTTGGAGTGGAAACAACGGTTATTGAAA
ttcacagtccaaatttagccttattctcatgggaaataaaattctctatgttcagAACTGCTCATGAGCTTGGAGTGGAAACAACGGTTATTGAAA
ttctctat CT-rich tract
aaataaaattctctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaagaaaacaatgttatctcatgtgtatttgattgttatctagtgttcacagtccaaatttagccttattctcatgggaaataaaattctctatgttcagAACTGCTCATGAGCTTGGAGTGGAAACAACGGTTATTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA