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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgccatttttaagctcccttcattctagttcttggaactggttgaagcaataaacctccccaattaatctttctaatcagaattactttctgttgttgtggccgttattttactaaatatttggttttgtgatgtaatcgtgtattatggttttattgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG

Basic information

species Arabidopsis thaliana
transcript AT5G14030.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86022142|gb|DR317895.1|DR317895
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAAC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAAC
EST: gi|116459815|gb|EG502407.1|EG502407
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|86022135|gb|DR317888.1|DR317888
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGC
EST: gi|86022136|gb|DR317889.1|DR317889
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACT
EST: gi|86022143|gb|DR317896.1|DR317896
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATAT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATAT
EST: gi|124975197|gb|EL048709.1|EL048709
EST:     CATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: CATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|125259594|gb|EL273679.1|EL273679
EST:     CTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: CTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|86022153|gb|DR317906.1|DR317906
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|116399796|gb|EG442388.1|EG442388
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|86022138|gb|DR317891.1|DR317891
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|86022144|gb|DR317897.1|DR317897
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|125205642|gb|EL220596.1|EL220596
EST:     TACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACA
genomic: TACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACA
EST: gi|164203880|gb|ES171461.1|ES171461
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACC
EST: gi|86022131|gb|DR317884.1|DR317884
EST:     GTGSTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GA-GCATACTC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTC
EST: gi|86022151|gb|DR317904.1|DR317904
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGC
EST: gi|86022157|gb|DR317910.1|DR317910
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|164231557|gb|EL988251.1|EL988251
EST:     CCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: CCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|86022137|gb|DR317890.1|DR317890
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAA
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAA
EST: gi|86022146|gb|DR317899.1|DR317899
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCA
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCA
EST: gi|124718550|gb|EH809952.1|EH809952
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTA
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTA
EST: gi|86022158|gb|DR317911.1|DR317911
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAA
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAA
EST: gi|116459826|gb|EG502418.1|EG502418
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|125049818|gb|EL122087.1|EL122087
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCC
EST: gi|124926105|gb|EL003999.1|EL003999
EST:     ATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: ATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|124840569|gb|EH925008.1|EH925008
EST:     CACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: CACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|163991772|gb|ES189033.1|ES189033
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGA
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGA
EST: gi|86022145|gb|DR317898.1|DR317898
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGAC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGAC
EST: gi|124930253|gb|EL007721.1|EL007721
EST:     CCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: CCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|116459820|gb|EG502412.1|EG502412
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|164170499|gb|ES167748.1|ES167748
EST:     TCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: TCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|164171026|gb|ES026648.1|ES026648
EST:     TGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCT
genomic: TGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCT
EST: gi|124880350|gb|EH959252.1|EH959252
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCC
EST: gi|125214060|gb|EL228714.1|EL228714
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATA
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATA
EST: gi|164135607|gb|EL998202.1|EL998202
EST:     CTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: CTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|116459814|gb|EG502406.1|EG502406
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|116459825|gb|EG502417.1|EG502417
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|164006832|gb|ES162352.1|ES162352
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTACCACTACTACCTCTAGATATCCTCGCAGA
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACT-CCACTACTACCTCTAGATATCCTCGCAGA
EST: gi|125086338|gb|EL145843.1|EL145843
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCT
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCT
EST: gi|163979826|gb|ES135507.1|ES135507
EST:     TGCTCCTGCTGTCGTTACTTTCCGCACTCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACC
genomic: TGCTCCTGCTGTCGTTACTTTCCGCA-TCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACC
EST: gi|124859111|gb|EH943548.1|EH943548
EST:     CTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
genomic: CTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|124997804|gb|EL070073.1|EL070073
EST:     TGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTACAG                         GAAGCATACTCAACTCCACTACTAC
genomic: TGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTT-CAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTAC
EST: gi|164058071|gb|ES200602.1|ES200602
EST:     TCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCNGACAAACCT
genomic: TCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCT
EST: gi|86022139|gb|DR317892.1|DR317892
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTC
EST: gi|164172200|gb|EL971880.1|EL971880
EST:     GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG                         GAAGCATACTCAACTCC
genomic: GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGgtttgccatt ... ttgtttgtagGAAGCATACTCAACTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactaaatatttggttttgtgatgtaatcgtgtattatggttttattgtttgtagGAAGCATACTCAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACGTG
 tactaaa  putative branch site (score: 1)
                                        ttttatt  putative PPT
                                tattatggttttatt  TA-rich tract